Straight from the Ministry of Tourism registry. Where a rate is shown, the operator published it here.
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Aanugan'du Finolhu and Aanugan'du Huraa, Kaafu Atoll
13 km from the airport · speedboat ~20 min · 384 rooms · 768 beds
Rannalhi, Kaafu Atoll
37 km from the airport · speedboat ~55 min · 122 rooms · 244 beds
Vaadhoo, Kaafu Atoll
11 km from the airport · speedboat ~20 min · 50 rooms · 100 beds
Lhohifushi, Kaafu Atoll
20 km from the airport · speedboat ~30 min · 202 rooms · 404 beds
Meedhupparu, Raa Atoll
153 km from the airport · seaplane/flight ~1 h · 238 rooms · 476 beds
Kothaifaru and Kuroshigiri, Raa Atoll
167 km from the airport · seaplane/flight ~1.25 h · 86 rooms · 172 beds
Alimatha, Vaavu Atoll
67 km from the airport · speedboat ~1.5 h · 156 rooms · 312 beds
Etheremadivaru, Alifu Alifu Atoll
66 km from the airport · speedboat ~1.5 h · 137 rooms · 274 beds
Dhigufinolhu, Kaafu Atoll
25 km from the airport · speedboat ~40 min · 113 rooms · 226 beds
Veligan'du Huraa, Kaafu Atoll
25 km from the airport · speedboat ~40 min · 88 rooms · 176 beds
Angaga, Alifu Dhaalu Atoll
99 km from the airport · seaplane/flight ~50 min · 90 rooms · 180 beds
Velavaru, Dhaalu Atoll
146 km from the airport · seaplane/flight ~1 h · 119 rooms · 238 beds
Kanifushi, Lhaviyani Atoll
132 km from the airport · seaplane/flight ~1 h · 190 rooms · 380 beds
Fares, Baa Atoll
136 km from the airport · seaplane/flight ~1 h · 210 rooms · 420 beds
Magudhdhuvaa, Gaafu Dhaalu Atoll
436 km from the airport · flight ~2.25 h · 100 rooms · 200 beds
Maagau, Dhaalu Atoll
154 km from the airport · seaplane/flight ~1 h · 101 rooms · 206 beds
Bandos, Kaafu Atoll
9.6 km from the airport · speedboat ~20 min · 220 rooms · 440 beds
Vabbinfaru, Kaafu Atoll
18 km from the airport · speedboat ~30 min · 48 rooms · 96 beds
Baros, Kaafu Atoll
15 km from the airport · speedboat ~25 min · 75 rooms · 150 beds
Bolifushi, Kaafu Atoll
18 km from the airport · speedboat ~30 min · 114 rooms · 228 beds
Kottefaru, Raa Atoll
156 km from the airport · seaplane/flight ~1 h · 145 rooms · 290 beds
Herethere, Seenu Atoll
537 km from the airport · flight ~2.5 h · 271 rooms · 542 beds
4°19’0.85”N73°20’43.59”E, Kaafu Atoll
25 km from the airport · speedboat ~40 min · 416 rooms · 832 beds
Giraavaru, Kaafu Atoll
13 km from the airport · speedboat ~20 min · 140 rooms · 280 beds